|I'm Patches, I'm a weredude.|
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Commander is a minor character of Bunnicula.
She tasks Agent 51 to bring significant evidence of supernatural, or else he is fired. At the end, he comes up empty handed and turns in his belongings which include a magic box, as he is surprised to find it before leaving. Commander notices the box and opens as actual ghosts emerge from it and start floating around her. This display of real supernatural phenomenon scares her and causes her to give 51 back his job, to the latter's joy.
She didn't seem to believe in the supernatural, though she did give Agent 51 a chance to find evidence. This shows she is willing to open her mind to something, once given proof.
When seeing actual ghosts surrounding her, she was very frightened that such things actually existed. She also recognized their threat level, as she quickly gave her subordinate back his job for him to defend people from the supernatural.